IL_8CRX_084

3D structure

PDB id

8CRX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cutibacterium acnes 70S ribosome with mRNA, P-site tRNA and Sarecycline bound

Experimental method

ELECTRON MICROSCOPY

Resolution

2.78 Å

Loop

Sequence

GAAGC*GUGAUAGC

Length

13 nucleotides

Bulged bases

8CRX|1|a|G|886, 8CRX|1|a|G|890

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8CRX_084 not in the Motif Atlas

Homologous match to IL_7RQB_018

Geometric discrepancy: 0.112

The information below is about IL_7RQB_018

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_17470.6

Basepair signature

cWW-tWW-L-R-tWH-L-cWW

Number of instances in this motif group

7

Unit IDs

8CRX|1|a|G|759
8CRX|1|a|A|760
8CRX|1|a|A|761
8CRX|1|a|G|762
8CRX|1|a|C|763
*
8CRX|1|a|G|884
8CRX|1|a|U|885
8CRX|1|a|G|886
8CRX|1|a|A|887
8CRX|1|a|U|888
8CRX|1|a|A|889
8CRX|1|a|G|890
8CRX|1|a|C|891

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain e

50S ribosomal protein L4

Chain k

50S ribosomal protein L15