IL_8CRX_112

3D structure

PDB id

8CRX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cutibacterium acnes 70S ribosome with mRNA, P-site tRNA and Sarecycline bound

Experimental method

ELECTRON MICROSCOPY

Resolution

2.78 Å

Loop

Sequence

UGGUGAAG*UGGAG

Length

13 nucleotides

Bulged bases

8CRX|1|a|U|1287

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8CRX_112 not in the Motif Atlas

Homologous match to IL_7RQB_047

Geometric discrepancy: 0.1549

The information below is about IL_7RQB_047

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_70923.2

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

28

Unit IDs

8CRX|1|a|U|1284
8CRX|1|a|G|1285
8CRX|1|a|G|1286
8CRX|1|a|U|1287
8CRX|1|a|G|1288
8CRX|1|a|A|1289
8CRX|1|a|A|1290
8CRX|1|a|G|1291
*
8CRX|1|a|U|1311
8CRX|1|a|G|1312
8CRX|1|a|G|1313
8CRX|1|a|A|1314
8CRX|1|a|G|1315

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain p

50S ribosomal protein L20

Chain r

50S ribosomal protein L22