IL_8CRX_166

3D structure

PDB id

8CRX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cutibacterium acnes 70S ribosome with mRNA, P-site tRNA and Sarecycline bound

Experimental method

ELECTRON MICROSCOPY

Resolution

2.78 Å

Loop

Sequence

GAAC*G(PSU)(PSU)C

Length

8 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8CRX_166 not in the Motif Atlas

Geometric match to IL_6AZ4_001

Geometric discrepancy: 0.3217

The information below is about IL_6AZ4_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_69145.1

Basepair signature

cWW-L-cWW-L

Number of instances in this motif group

5

Unit IDs

8CRX|1|a|G|2770
8CRX|1|a|A|2771
8CRX|1|a|A|2772
8CRX|1|a|C|2773
*
8CRX|1|a|G|2785
8CRX|1|a|PSU|2786
8CRX|1|a|PSU|2787
8CRX|1|a|C|2788

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain C

Transfer RNA; tRNA

Chain c

50S ribosomal protein L2