IL_8CRX_169

3D structure

PDB id

8CRX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cutibacterium acnes 70S ribosome with mRNA, P-site tRNA and Sarecycline bound

Experimental method

ELECTRON MICROSCOPY

Resolution

2.78 Å

Loop

Sequence

UUAGUAC*GGACCG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8CRX_169 not in the Motif Atlas

Homologous match to IL_5J7L_346

Geometric discrepancy: 0.1123

The information below is about IL_5J7L_346

Detailed Annotation

Sarcin-Ricin target in LSU H95; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_16458.4

Basepair signature

cWW-L-R-L-R-cSH-tWH-tHS-cWW

Number of instances in this motif group

5

Unit IDs

8CRX|1|a|U|2834
8CRX|1|a|U|2835
8CRX|1|a|A|2836
8CRX|1|a|G|2837
8CRX|1|a|U|2838
8CRX|1|a|A|2839
8CRX|1|a|C|2840
*
8CRX|1|a|G|2845
8CRX|1|a|G|2846
8CRX|1|a|A|2847
8CRX|1|a|C|2848
8CRX|1|a|C|2849
8CRX|1|a|G|2850

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain g

50S ribosomal protein L6