IL_8CSP_004

3D structure

PDB id

8CSP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human mitochondrial small subunit assembly intermediate (State A)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.66 Å

Loop

Sequence

UAC*GA

Length

5 nucleotides

Bulged bases

8CSP|1|A|A|691

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8CSP_004 not in the Motif Atlas

Geometric match to IL_4R4V_004

Geometric discrepancy: 0.2664

The information below is about IL_4R4V_004

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_14190.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

134

Unit IDs

8CSP|1|A|U|690
8CSP|1|A|A|691
8CSP|1|A|C|692
*
8CSP|1|A|G|822
8CSP|1|A|A|823

Current chains

Chain A

12S mitochondrial rRNA

Nearby chains

Chain 9

Nitric oxide-associated protein 1