IL_8CSP_009

3D structure

PDB id

8CSP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human mitochondrial small subunit assembly intermediate (State A)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.66 Å

Loop

Sequence

GCAC*GC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8CSP_009 not in the Motif Atlas

Geometric match to IL_3DIL_004

Geometric discrepancy: 0.2018

The information below is about IL_3DIL_004

Detailed Annotation

Major groove platform; stack outside cWW

Broad Annotation

No text annotation

Motif group

IL_74641.1

Basepair signature

cWW-tSH-cWW-L

Number of instances in this motif group

32

Unit IDs

8CSP|1|A|G|762
8CSP|1|A|C|763
8CSP|1|A|A|764
8CSP|1|A|C|765
*
8CSP|1|A|G|777
8CSP|1|A|C|778

Current chains

Chain A

12S mitochondrial rRNA

Nearby chains

Chain 9

Nitric oxide-associated protein 1

Chain N

28S ribosomal protein S17, mitochondrial