IL_8CSP_034

3D structure

PDB id

8CSP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human mitochondrial small subunit assembly intermediate (State A)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.66 Å

Loop

Sequence

GU*AAU

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8CSP_034 not in the Motif Atlas

Geometric match to IL_5J7L_032

Geometric discrepancy: 0.233

The information below is about IL_5J7L_032

Detailed Annotation

Single stack bend

Broad Annotation

No text annotation

Motif group

IL_26793.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

16

Unit IDs

8CSP|1|A|G|1206
8CSP|1|A|U|1207
*
8CSP|1|A|A|1357
8CSP|1|A|A|1358
8CSP|1|A|U|1359

Current chains

Chain A

12S mitochondrial rRNA

Nearby chains

Chain 7

Methyltransferase-like protein 17, mitochondrial

Chain 8

Malonyl-CoA-acyl carrier protein transacylase, mitochondrial