IL_8CSQ_039

3D structure

PDB id

8CSQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human mitochondrial small subunit assembly intermediate (State B)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.54 Å

Loop

Sequence

UGUU*AAAUG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8CSQ_039 not in the Motif Atlas

Geometric match to IL_1GID_008

Geometric discrepancy: 0.3248

The information below is about IL_1GID_008

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

36

Unit IDs

8CSQ|1|A|U|1205
8CSQ|1|A|G|1206
8CSQ|1|A|U|1207
8CSQ|1|A|U|1208
*
8CSQ|1|A|A|1356
8CSQ|1|A|A|1357
8CSQ|1|A|A|1358
8CSQ|1|A|U|1359
8CSQ|1|A|G|1360

Current chains

Chain A

12S mitochondrial rRNA

Nearby chains

Chain 7

Methyltransferase-like protein 17, mitochondrial

Chain 8

Malonyl-CoA-acyl carrier protein transacylase, mitochondrial