IL_8CVK_244

3D structure

PDB id

8CVK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A-site Phe-NH-tRNAphe, peptidyl P-site fMRC-NH-tRNAmet, and deacylated E-site tRNAphe at 2.50A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.5 Å

Loop

Sequence

CGAAA(5MU)UC(5MC)UUG*C(5MC)UG

Length

16 nucleotides

Bulged bases

8CVK|1|2A|A|1938, 8CVK|1|2A|U|1944, 8CVK|1|2A|U|1963

QA status

Modified nucleotides: 5MU, 5MC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8CVK_244 not in the Motif Atlas

Geometric match to IL_4WF9_077

Geometric discrepancy: 0.1273

The information below is about IL_4WF9_077

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_42218.2

Basepair signature

cWW-L-R-cHW-cWW-L-L-L-R-L

Number of instances in this motif group

5

Unit IDs

8CVK|1|2A|C|1934
8CVK|1|2A|G|1935
8CVK|1|2A|A|1936
8CVK|1|2A|A|1937
8CVK|1|2A|A|1938
8CVK|1|2A|5MU|1939
8CVK|1|2A|U|1940
8CVK|1|2A|C|1941
8CVK|1|2A|5MC|1942
8CVK|1|2A|U|1943
8CVK|1|2A|U|1944
8CVK|1|2A|G|1945
*
8CVK|1|2A|C|1961
8CVK|1|2A|5MC|1962
8CVK|1|2A|U|1963
8CVK|1|2A|G|1964

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2D

50S ribosomal protein L2

Chain 2a

Small subunit ribosomal RNA; SSU rRNA

Chain 2w

Transfer RNA; tRNA

Chain 2x

Transfer RNA; tRNA