IL_8CVK_312

3D structure

PDB id

8CVK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A-site Phe-NH-tRNAphe, peptidyl P-site fMRC-NH-tRNAmet, and deacylated E-site tRNAphe at 2.50A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.5 Å

Loop

Sequence

GAGAG*UGGU

Length

9 nucleotides

Bulged bases

8CVK|1|2a|A|665

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8CVK_312 not in the Motif Atlas

Homologous match to IL_4LFB_029

Geometric discrepancy: 0.0799

The information below is about IL_4LFB_029

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

8CVK|1|2a|G|662
8CVK|1|2a|A|663
8CVK|1|2a|G|664
8CVK|1|2a|A|665
8CVK|1|2a|G|666
*
8CVK|1|2a|U|740
8CVK|1|2a|G|741
8CVK|1|2a|G|742
8CVK|1|2a|U|743

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2f

30S ribosomal protein S6

Chain 2o

30S ribosomal protein S15

Chain 2r

30S ribosomal protein S18