3D structure

PDB id
8CVK (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A-site Phe-NH-tRNAphe, peptidyl P-site fMRC-NH-tRNAmet, and deacylated E-site tRNAphe at 2.50A resolution
Experimental method
X-RAY DIFFRACTION
Resolution
2.5 Å

Loop

Sequence
GAGAG*UGGU
Length
9 nucleotides
Bulged bases
8CVK|1|2a|A|665
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8CVK_312 not in the Motif Atlas
Homologous match to IL_4LFB_029
Geometric discrepancy: 0.0799
The information below is about IL_4LFB_029
Detailed Annotation
Tandem non-canonical cWW pairs
Broad Annotation
No text annotation
Motif group
IL_85033.2
Basepair signature
cWW-cWW-cWW-cWW
Number of instances in this motif group
35

Unit IDs

8CVK|1|2a|G|662
8CVK|1|2a|A|663
8CVK|1|2a|G|664
8CVK|1|2a|A|665
8CVK|1|2a|G|666
*
8CVK|1|2a|U|740
8CVK|1|2a|G|741
8CVK|1|2a|G|742
8CVK|1|2a|U|743

Current chains

Chain 2a
16S Ribosomal RNA

Nearby chains

Chain 2f
30S ribosomal protein S6
Chain 2o
30S ribosomal protein S15
Chain 2r
30S ribosomal protein S18

Coloring options:


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