IL_8CVK_346

3D structure

PDB id

8CVK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A-site Phe-NH-tRNAphe, peptidyl P-site fMRC-NH-tRNAmet, and deacylated E-site tRNAphe at 2.50A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.5 Å

Loop

Sequence

GG*CUAC

Length

6 nucleotides

Bulged bases

8CVK|1|1A|A|896

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8CVK_346 not in the Motif Atlas

Geometric match to IL_8DP3_001

Geometric discrepancy: 0.3886

The information below is about IL_8DP3_001

Detailed Annotation

Major groove platform

Broad Annotation

Major groove platform

Motif group

IL_02555.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

9

Unit IDs

8CVK|1|1A|G|881
8CVK|1|1A|G|882
*
8CVK|1|1A|C|894
8CVK|1|1A|U|895
8CVK|1|1A|A|896
8CVK|1|1A|C|897

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 1Z

50S ribosomal protein L25

Chain 1w

Transfer RNA; tRNA