IL_8CVL_315
3D structure
- PDB id
- 8CVL (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A-site Phe-NH-tRNAphe, peptidyl P-site fMTHSMRC-NH-tRNAmet, and deacylated E-site tRNAphe at 2.30A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.3 Å
Loop
- Sequence
- GGAAUU*AGGAAC
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8CVL_315 not in the Motif Atlas
- Homologous match to IL_5J7L_034
- Geometric discrepancy: 0.0577
- The information below is about IL_5J7L_034
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_04668.2
- Basepair signature
- cWW-cWW-cWW-L-R-L-R-cWW
- Number of instances in this motif group
- 8
Unit IDs
8CVL|1|2a|G|673
8CVL|1|2a|G|674
8CVL|1|2a|A|675
8CVL|1|2a|A|676
8CVL|1|2a|U|677
8CVL|1|2a|U|678
*
8CVL|1|2a|A|712
8CVL|1|2a|G|713
8CVL|1|2a|G|714
8CVL|1|2a|A|715
8CVL|1|2a|A|716
8CVL|1|2a|C|717
Current chains
- Chain 2a
- 16S Ribosomal RNA
Nearby chains
- Chain 2D
- 50S ribosomal protein L2
- Chain 2f
- 30S ribosomal protein S6
- Chain 2k
- 30S ribosomal protein S11
- Chain 2r
- 30S ribosomal protein S18
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