IL_8CVM_018

3D structure

PDB id

8CVM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cutibacterium acnes 50S ribosomal subunit with P-site tRNA and Sarecycline bound in the local refined map

Experimental method

ELECTRON MICROSCOPY

Resolution

2.66 Å

Loop

Sequence

GAAGC*GUGAUAGC

Length

13 nucleotides

Bulged bases

8CVM|1|a|G|886, 8CVM|1|a|G|890

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8CVM_018 not in the Motif Atlas

Geometric match to IL_7RQB_018

Geometric discrepancy: 0.112

The information below is about IL_7RQB_018

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_17470.6

Basepair signature

cWW-tWW-L-R-tWH-L-cWW

Number of instances in this motif group

7

Unit IDs

8CVM|1|a|G|759
8CVM|1|a|A|760
8CVM|1|a|A|761
8CVM|1|a|G|762
8CVM|1|a|C|763
*
8CVM|1|a|G|884
8CVM|1|a|U|885
8CVM|1|a|G|886
8CVM|1|a|A|887
8CVM|1|a|U|888
8CVM|1|a|A|889
8CVM|1|a|G|890
8CVM|1|a|C|891

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain e

50S ribosomal protein L4

Chain k

50S ribosomal protein L15