IL_8CVM_029
3D structure
- PDB id
- 8CVM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cutibacterium acnes 50S ribosomal subunit with P-site tRNA and Sarecycline bound in the local refined map
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.66 Å
Loop
- Sequence
- GAGGUAG*CGAAUGC
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8CVM_029 not in the Motif Atlas
- Homologous match to IL_5J7L_270
- Geometric discrepancy: 0.0813
- The information below is about IL_5J7L_270
- Detailed Annotation
- 7x7 Sarcin-Ricin with intercalated A; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_29198.2
- Basepair signature
- cWW-cWW-L-R-cSH-R-tWH-tHS-cWW
- Number of instances in this motif group
- 4
Unit IDs
8CVM|1|a|G|941
8CVM|1|a|A|942
8CVM|1|a|G|943
8CVM|1|a|G|944
8CVM|1|a|U|945
8CVM|1|a|A|946
8CVM|1|a|G|947
*
8CVM|1|a|C|999
8CVM|1|a|G|1000
8CVM|1|a|A|1001
8CVM|1|a|A|1002
8CVM|1|a|U|1003
8CVM|1|a|G|1004
8CVM|1|a|C|1005
Current chains
- Chain a
- 23S ribosomal RNA
Nearby chains
- Chain b
- 5S ribosomal RNA; 5S rRNA
- Chain l
- 50S ribosomal protein L16
- Chain u
- 50S ribosomal protein L25
- Chain v
- 50S ribosomal protein L27
- Chain y
- 50S ribosomal protein L30
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