IL_8CVM_046

3D structure

PDB id

8CVM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cutibacterium acnes 50S ribosomal subunit with P-site tRNA and Sarecycline bound in the local refined map

Experimental method

ELECTRON MICROSCOPY

Resolution

2.66 Å

Loop

Sequence

UGGUGAAG*UGGAG

Length

13 nucleotides

Bulged bases

8CVM|1|a|U|1287

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8CVM_046 not in the Motif Atlas

Homologous match to IL_7RQB_047

Geometric discrepancy: 0.1549

The information below is about IL_7RQB_047

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_70923.2

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

28

Unit IDs

8CVM|1|a|U|1284
8CVM|1|a|G|1285
8CVM|1|a|G|1286
8CVM|1|a|U|1287
8CVM|1|a|G|1288
8CVM|1|a|A|1289
8CVM|1|a|A|1290
8CVM|1|a|G|1291
*
8CVM|1|a|U|1311
8CVM|1|a|G|1312
8CVM|1|a|G|1313
8CVM|1|a|A|1314
8CVM|1|a|G|1315

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain p

50S ribosomal protein L20

Chain r

50S ribosomal protein L22