IL_8CVM_050

3D structure

PDB id

8CVM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cutibacterium acnes 50S ribosomal subunit with P-site tRNA and Sarecycline bound in the local refined map

Experimental method

ELECTRON MICROSCOPY

Resolution

2.66 Å

Loop

Sequence

GUCAA*UGC

Length

8 nucleotides

Bulged bases

8CVM|1|a|G|1408

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8CVM_050 not in the Motif Atlas

Homologous match to IL_7RQB_051

Geometric discrepancy: 0.1836

The information below is about IL_7RQB_051

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_63596.6

Basepair signature

cWW-cWS-cSH-tWH-cWW-L

Number of instances in this motif group

14

Unit IDs

8CVM|1|a|G|1395
8CVM|1|a|U|1396
8CVM|1|a|C|1397
8CVM|1|a|A|1398
8CVM|1|a|A|1399
*
8CVM|1|a|U|1407
8CVM|1|a|G|1408
8CVM|1|a|C|1409

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain r

50S ribosomal protein L22