IL_8CVM_058

3D structure

PDB id

8CVM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cutibacterium acnes 50S ribosomal subunit with P-site tRNA and Sarecycline bound in the local refined map

Experimental method

ELECTRON MICROSCOPY

Resolution

2.66 Å

Loop

Sequence

GUGA*UGUAC

Length

9 nucleotides

Bulged bases

8CVM|1|a|U|1742

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8CVM_058 not in the Motif Atlas

Homologous match to IL_5J7L_296

Geometric discrepancy: 0.2206

The information below is about IL_5J7L_296

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_58112.2

Basepair signature

cWW-cWW-L-R-cWW

Number of instances in this motif group

4

Unit IDs

8CVM|1|a|G|1612
8CVM|1|a|U|1613
8CVM|1|a|G|1614
8CVM|1|a|A|1615
*
8CVM|1|a|U|1740
8CVM|1|a|G|1741
8CVM|1|a|U|1742
8CVM|1|a|A|1743
8CVM|1|a|C|1744

Current chains

Chain a

23S ribosomal RNA

Nearby chains