IL_8CVM_059

3D structure

PDB id

8CVM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cutibacterium acnes 50S ribosomal subunit with P-site tRNA and Sarecycline bound in the local refined map

Experimental method

ELECTRON MICROSCOPY

Resolution

2.66 Å

Loop

Sequence

GUAG*UGAUC

Length

9 nucleotides

Bulged bases

8CVM|1|a|U|1737

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8CVM_059 not in the Motif Atlas

Homologous match to IL_7RQB_057

Geometric discrepancy: 0.1415

The information below is about IL_7RQB_057

Detailed Annotation

tSH-tHW

Broad Annotation

No text annotation

Motif group

IL_04059.1

Basepair signature

cWW-tWH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

8CVM|1|a|G|1617
8CVM|1|a|U|1618
8CVM|1|a|A|1619
8CVM|1|a|G|1620
*
8CVM|1|a|U|1734
8CVM|1|a|G|1735
8CVM|1|a|A|1736
8CVM|1|a|U|1737
8CVM|1|a|C|1738

Current chains

Chain a

23S ribosomal RNA

Nearby chains