IL_8CVM_061

3D structure

PDB id

8CVM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cutibacterium acnes 50S ribosomal subunit with P-site tRNA and Sarecycline bound in the local refined map

Experimental method

ELECTRON MICROSCOPY

Resolution

2.66 Å

Loop

Sequence

UGUGG*UGAGG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8CVM_061 not in the Motif Atlas

Homologous match to IL_5J7L_300

Geometric discrepancy: 0.4033

The information below is about IL_5J7L_300

Detailed Annotation

tSH-tHW-tHS

Broad Annotation

No text annotation

Motif group

IL_38862.4

Basepair signature

cWW-cSH-R-tWH-tHS-cWW

Number of instances in this motif group

5

Unit IDs

8CVM|1|a|U|1655
8CVM|1|a|G|1656
8CVM|1|a|U|1657
8CVM|1|a|G|1658
8CVM|1|a|G|1659
*
8CVM|1|a|U|1695
8CVM|1|a|G|1696
8CVM|1|a|A|1697
8CVM|1|a|G|1698
8CVM|1|a|G|1699

Current chains

Chain a

23S ribosomal RNA

Nearby chains