IL_8CVM_076

3D structure

PDB id

8CVM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cutibacterium acnes 50S ribosomal subunit with P-site tRNA and Sarecycline bound in the local refined map

Experimental method

ELECTRON MICROSCOPY

Resolution

2.66 Å

Loop

Sequence

UUAAG*UUAAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8CVM_076 not in the Motif Atlas

Homologous match to IL_7RQB_074

Geometric discrepancy: 0.1504

The information below is about IL_7RQB_074

Detailed Annotation

UAA/GAN with extra pair

Broad Annotation

No text annotation

Motif group

IL_90318.1

Basepair signature

cWW-tSH-L-R-L-R-cWW

Number of instances in this motif group

3

Unit IDs

8CVM|1|a|U|2034
8CVM|1|a|U|2035
8CVM|1|a|A|2036
8CVM|1|a|A|2037
8CVM|1|a|G|2038
*
8CVM|1|a|U|2070
8CVM|1|a|U|2071
8CVM|1|a|A|2072
8CVM|1|a|A|2073
8CVM|1|a|G|2074

Current chains

Chain a

23S ribosomal RNA

Nearby chains