IL_8CVM_077

3D structure

PDB id

8CVM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cutibacterium acnes 50S ribosomal subunit with P-site tRNA and Sarecycline bound in the local refined map

Experimental method

ELECTRON MICROSCOPY

Resolution

2.66 Å

Loop

Sequence

GGGAA*UGAAC

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8CVM_077 not in the Motif Atlas

Homologous match to IL_7A0S_070

Geometric discrepancy: 0.3919

The information below is about IL_7A0S_070

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_50730.2

Basepair signature

cWW-tSH-tHS-tHS-cWW

Number of instances in this motif group

19

Unit IDs

8CVM|1|a|G|2039
8CVM|1|a|G|2040
8CVM|1|a|G|2041
8CVM|1|a|A|2042
8CVM|1|a|A|2043
*
8CVM|1|a|U|2065
8CVM|1|a|G|2066
8CVM|1|a|A|2067
8CVM|1|a|A|2068
8CVM|1|a|C|2069

Current chains

Chain a

23S ribosomal RNA

Nearby chains