IL_8CVM_079

3D structure

PDB id

8CVM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cutibacterium acnes 50S ribosomal subunit with P-site tRNA and Sarecycline bound in the local refined map

Experimental method

ELECTRON MICROSCOPY

Resolution

2.66 Å

Loop

Sequence

GC*GCAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8CVM_079 not in the Motif Atlas

Geometric match to IL_5J7L_318

Geometric discrepancy: 0.0752

The information below is about IL_5J7L_318

Detailed Annotation

Bulged stacked bases

Broad Annotation

Bulged stacked bases

Motif group

IL_22551.4

Basepair signature

cWW-L-cWW-L

Number of instances in this motif group

9

Unit IDs

8CVM|1|a|G|2116
8CVM|1|a|C|2117
*
8CVM|1|a|G|2147
8CVM|1|a|C|2148
8CVM|1|a|A|2149
8CVM|1|a|C|2150

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain C

Transfer RNA; tRNA