IL_8CVM_084

3D structure

PDB id

8CVM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cutibacterium acnes 50S ribosomal subunit with P-site tRNA and Sarecycline bound in the local refined map

Experimental method

ELECTRON MICROSCOPY

Resolution

2.66 Å

Loop

Sequence

GA*UACC

Length

6 nucleotides

Bulged bases

8CVM|1|a|A|2621

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8CVM_084 not in the Motif Atlas

Homologous match to IL_7RQB_081

Geometric discrepancy: 0.0764

The information below is about IL_7RQB_081

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_42622.4

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

33

Unit IDs

8CVM|1|a|G|2252
8CVM|1|a|A|2253
*
8CVM|1|a|U|2620
8CVM|1|a|A|2621
8CVM|1|a|C|2622
8CVM|1|a|C|2623

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain C

Transfer RNA; tRNA

Chain c

50S ribosomal protein L2