IL_8CVM_087

3D structure

PDB id

8CVM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cutibacterium acnes 50S ribosomal subunit with P-site tRNA and Sarecycline bound in the local refined map

Experimental method

ELECTRON MICROSCOPY

Resolution

2.66 Å

Loop

Sequence

UGUG*CAA

Length

7 nucleotides

Bulged bases

8CVM|1|a|G|2384

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8CVM_087 not in the Motif Atlas

Geometric match to IL_3TD0_005

Geometric discrepancy: 0.3419

The information below is about IL_3TD0_005

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_57744.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

22

Unit IDs

8CVM|1|a|U|2383
8CVM|1|a|G|2384
8CVM|1|a|U|2385
8CVM|1|a|G|2386
*
8CVM|1|a|C|2402
8CVM|1|a|A|2403
8CVM|1|a|A|2404

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain c

50S ribosomal protein L2

Chain w

50S ribosomal protein L28