IL_8CVM_088

3D structure

PDB id

8CVM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cutibacterium acnes 50S ribosomal subunit with P-site tRNA and Sarecycline bound in the local refined map

Experimental method

ELECTRON MICROSCOPY

Resolution

2.66 Å

Loop

Sequence

CAG*UGGUG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8CVM_088 not in the Motif Atlas

Homologous match to IL_7RQB_088

Geometric discrepancy: 0.2168

The information below is about IL_7RQB_088

Detailed Annotation

Isolated tHS basepair with bulges

Broad Annotation

No text annotation

Motif group

IL_38958.7

Basepair signature

cWW-tHS-cWW

Number of instances in this motif group

15

Unit IDs

8CVM|1|a|C|2479
8CVM|1|a|A|2480
8CVM|1|a|G|2481
*
8CVM|1|a|U|2499
8CVM|1|a|G|2500
8CVM|1|a|G|2501
8CVM|1|a|U|2502
8CVM|1|a|G|2503

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain b

5S ribosomal RNA; 5S rRNA

Chain f

50S ribosomal protein L5

Chain n

50S ribosomal protein L18