IL_8CVM_102
3D structure
- PDB id
- 8CVM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cutibacterium acnes 50S ribosomal subunit with P-site tRNA and Sarecycline bound in the local refined map
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.66 Å
Loop
- Sequence
- UUGAG*CAAGAUAAG
- Length
- 14 nucleotides
- Bulged bases
- 8CVM|1|a|A|2962
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8CVM_102 not in the Motif Atlas
- Homologous match to IL_4WF9_099
- Geometric discrepancy: 0.0748
- The information below is about IL_4WF9_099
- Detailed Annotation
- tSH-tHS-tHW
- Broad Annotation
- tSH-tHS-tHW
- Motif group
- IL_04638.3
- Basepair signature
- cWW-tSH-tHW-tHS-cSH-cWW-L
- Number of instances in this motif group
- 5
Unit IDs
8CVM|1|a|U|2818
8CVM|1|a|U|2819
8CVM|1|a|G|2820
8CVM|1|a|A|2821
8CVM|1|a|G|2822
*
8CVM|1|a|C|2956
8CVM|1|a|A|2957
8CVM|1|a|A|2958
8CVM|1|a|G|2959
8CVM|1|a|A|2960
8CVM|1|a|U|2961
8CVM|1|a|A|2962
8CVM|1|a|A|2963
8CVM|1|a|G|2964
Current chains
- Chain a
- 23S ribosomal RNA
Nearby chains
- Chain d
- 50S ribosomal protein L3
- Chain i
- 50S ribosomal protein L13
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