IL_8CVM_104
3D structure
- PDB id
- 8CVM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cutibacterium acnes 50S ribosomal subunit with P-site tRNA and Sarecycline bound in the local refined map
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.66 Å
Loop
- Sequence
- CCUCU*ACG
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8CVM_104 not in the Motif Atlas
- Homologous match to IL_7RQB_104
- Geometric discrepancy: 0.0759
- The information below is about IL_7RQB_104
- Detailed Annotation
- C-loop
- Broad Annotation
- No text annotation
- Motif group
- IL_63596.6
- Basepair signature
- cWW-cWS-cSH-tWH-cWW-L
- Number of instances in this motif group
- 14
Unit IDs
8CVM|1|a|C|2862
8CVM|1|a|C|2863
8CVM|1|a|U|2864
8CVM|1|a|C|2865
8CVM|1|a|U|2866
*
8CVM|1|a|A|2907
8CVM|1|a|C|2908
8CVM|1|a|G|2909
Current chains
- Chain a
- 23S ribosomal RNA
Nearby chains
- Chain d
- 50S ribosomal protein L3
- Chain j
- 50S ribosomal protein L14
- Chain o
- 50S ribosomal protein L19
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