IL_8CVM_105
3D structure
- PDB id
- 8CVM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cutibacterium acnes 50S ribosomal subunit with P-site tRNA and Sarecycline bound in the local refined map
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.66 Å
Loop
- Sequence
- UGUC*GUUGG*G
- Length
- 10 nucleotides
- Bulged bases
- 8CVM|1|a|U|2871
- QA status
- Missing nucleotides
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8CVM_105 not in the Motif Atlas
- Homologous match to IL_4WF9_102
- Geometric discrepancy: 0.2346
- The information below is about IL_4WF9_102
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_23774.1
- Basepair signature
- cWW-L-R-L-tHS-cWW
- Number of instances in this motif group
- 11
Unit IDs
8CVM|1|a|U|2869
8CVM|1|a|G|2870
8CVM|1|a|U|2871
8CVM|1|a|C|2873
*
8CVM|1|a|G|2900
8CVM|1|a|U|2901
8CVM|1|a|U|2902
8CVM|1|a|G|2903
8CVM|1|a|G|2904
*
8CVM|1|a|G|2904
Current chains
- Chain a
- 23S ribosomal RNA
Nearby chains
- Chain d
- 50S ribosomal protein L3
- Chain m
- 50S ribosomal protein L17
- Chain o
- 50S ribosomal protein L19
Coloring options: