IL_8CVM_107
3D structure
- PDB id
- 8CVM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cutibacterium acnes 50S ribosomal subunit with P-site tRNA and Sarecycline bound in the local refined map
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.66 Å
Loop
- Sequence
- GAUAAC*GGAAGC
- Length
- 12 nucleotides
- Bulged bases
- 8CVM|1|a|A|2947
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8CVM_107 not in the Motif Atlas
- Homologous match to IL_7A0S_098
- Geometric discrepancy: 0.0938
- The information below is about IL_7A0S_098
- Detailed Annotation
- UAA/GAN with extra cWW
- Broad Annotation
- No text annotation
- Motif group
- IL_49767.8
- Basepair signature
- cWW-cWW-tWH-L-tHS-cWW
- Number of instances in this motif group
- 6
Unit IDs
8CVM|1|a|G|2919
8CVM|1|a|A|2920
8CVM|1|a|U|2921
8CVM|1|a|A|2922
8CVM|1|a|A|2923
8CVM|1|a|C|2924
*
8CVM|1|a|G|2944
8CVM|1|a|G|2945
8CVM|1|a|A|2946
8CVM|1|a|A|2947
8CVM|1|a|G|2948
8CVM|1|a|C|2949
Current chains
- Chain a
- 23S ribosomal RNA
Nearby chains
- Chain 3
- 50S ribosomal protein L36
- Chain g
- 50S ribosomal protein L6
- Chain i
- 50S ribosomal protein L13
Coloring options: