IL_8CVO_013
3D structure
- PDB id
- 8CVO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cutibacterium acnes 30S ribosomal subunit with Sarecycline bound, head domain only in the local refined map
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.95 Å
Loop
- Sequence
- GUUGC*GGACUC
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8CVO_013 not in the Motif Atlas
- Homologous match to IL_5J7L_051
- Geometric discrepancy: 0.2555
- The information below is about IL_5J7L_051
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_06691.1
- Basepair signature
- cWW-cWS-L-R-L-R-cWW-L
- Number of instances in this motif group
- 2
Unit IDs
8CVO|1|A|G|1109
8CVO|1|A|U|1110
8CVO|1|A|U|1111
8CVO|1|A|G|1112
8CVO|1|A|C|1113
*
8CVO|1|A|G|1130
8CVO|1|A|G|1131
8CVO|1|A|A|1132
8CVO|1|A|C|1133
8CVO|1|A|U|1134
8CVO|1|A|C|1135
Current chains
- Chain A
- 16S ribosomal RNA
Nearby chains
- Chain J
- 30S ribosomal protein S9
- Chain M
- 30S ribosomal protein S10
Coloring options: