IL_8CVO_016
3D structure
- PDB id
- 8CVO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cutibacterium acnes 30S ribosomal subunit with Sarecycline bound, head domain only in the local refined map
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.95 Å
Loop
- Sequence
- UACAGAG*CGGAAAG
- Length
- 14 nucleotides
- Bulged bases
- 8CVO|1|A|G|1272
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8CVO_016 not in the Motif Atlas
- Homologous match to IL_4LFB_051
- Geometric discrepancy: 0.0978
- The information below is about IL_4LFB_051
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_12056.1
- Basepair signature
- cWW-L-R-R-bif-cWW
- Number of instances in this motif group
- 2
Unit IDs
8CVO|1|A|U|1233
8CVO|1|A|A|1234
8CVO|1|A|C|1235
8CVO|1|A|A|1236
8CVO|1|A|G|1237
8CVO|1|A|A|1238
8CVO|1|A|G|1239
*
8CVO|1|A|C|1270
8CVO|1|A|G|1271
8CVO|1|A|G|1272
8CVO|1|A|A|1273
8CVO|1|A|A|1274
8CVO|1|A|A|1275
8CVO|1|A|G|1276
Current chains
- Chain A
- 16S ribosomal RNA
Nearby chains
- Chain I
- 30S ribosomal protein S7
- Chain J
- 30S ribosomal protein S9
- Chain M
- 30S ribosomal protein S10
- Chain S
- 30S ribosomal protein S14 type Z
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