IL_8CVO_017
3D structure
- PDB id
- 8CVO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cutibacterium acnes 30S ribosomal subunit with Sarecycline bound, head domain only in the local refined map
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.95 Å
Loop
- Sequence
- GUGG*CGAAUC
- Length
- 10 nucleotides
- Bulged bases
- 8CVO|1|A|G|1243, 8CVO|1|A|A|1266
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8CVO_017 not in the Motif Atlas
- Homologous match to IL_4LFB_052
- Geometric discrepancy: 0.1228
- The information below is about IL_4LFB_052
- Detailed Annotation
- 180 degree turn
- Broad Annotation
- No text annotation
- Motif group
- IL_08849.1
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 2
Unit IDs
8CVO|1|A|G|1241
8CVO|1|A|U|1242
8CVO|1|A|G|1243
8CVO|1|A|G|1244
*
8CVO|1|A|C|1263
8CVO|1|A|G|1264
8CVO|1|A|A|1265
8CVO|1|A|A|1266
8CVO|1|A|U|1267
8CVO|1|A|C|1268
Current chains
- Chain A
- 16S ribosomal RNA
Nearby chains
- Chain G
- 30S ribosomal protein S3
- Chain M
- 30S ribosomal protein S10
- Chain S
- 30S ribosomal protein S14 type Z
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