IL_8CVO_019

3D structure

PDB id

8CVO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cutibacterium acnes 30S ribosomal subunit with Sarecycline bound, head domain only in the local refined map

Experimental method

ELECTRON MICROSCOPY

Resolution

2.95 Å

Loop

Sequence

CGGAUU*AUGAAG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8CVO_019 not in the Motif Atlas

Geometric match to IL_4LFB_055

Geometric discrepancy: 0.0812

The information below is about IL_4LFB_055

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_28265.1

Basepair signature

cWW-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

7

Unit IDs

8CVO|1|A|C|1289
8CVO|1|A|G|1290
8CVO|1|A|G|1291
8CVO|1|A|A|1292
8CVO|1|A|U|1293
8CVO|1|A|U|1294
*
8CVO|1|A|A|1315
8CVO|1|A|U|1316
8CVO|1|A|G|1317
8CVO|1|A|A|1318
8CVO|1|A|A|1319
8CVO|1|A|G|1320

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain N

30S ribosomal protein S13