IL_8CVO_020

3D structure

PDB id

8CVO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cutibacterium acnes 30S ribosomal subunit with Sarecycline bound, head domain only in the local refined map

Experimental method

ELECTRON MICROSCOPY

Resolution

2.95 Å

Loop

Sequence

GGAU*GGUUC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8CVO_020 not in the Motif Atlas

Geometric match to IL_1HYS_004

Geometric discrepancy: 0.3193

The information below is about IL_1HYS_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_64231.5

Basepair signature

cWW-cWW-L-R-L-cWW

Number of instances in this motif group

11

Unit IDs

8CVO|1|A|G|982
8CVO|1|A|G|983
8CVO|1|A|A|984
8CVO|1|A|U|985
*
8CVO|1|A|G|1024
8CVO|1|A|G|1025
8CVO|1|A|U|1026
8CVO|1|A|U|1027
8CVO|1|A|C|1028

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain G

30S ribosomal protein S3