IL_8CWO_011

3D structure

PDB id

8CWO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cutibacterium acnes 30S ribosomal subunit with Sarecycline bound, body domain only in the local refined map

Experimental method

ELECTRON MICROSCOPY

Resolution

2.84 Å

Loop

Sequence

GGAUAAC*GCUAAUAC

Length

15 nucleotides

Bulged bases

8CWO|1|A|U|174

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8CWO_011 not in the Motif Atlas

Homologous match to IL_5J7L_012

Geometric discrepancy: 0.0842

The information below is about IL_5J7L_012

Detailed Annotation

tWH-tWH-tHW-tHW

Broad Annotation

No text annotation

Motif group

IL_80604.6

Basepair signature

cWW-cWW-tWH-tWH-tHW-tHW-cWW

Number of instances in this motif group

3

Unit IDs

8CWO|1|A|G|148
8CWO|1|A|G|149
8CWO|1|A|A|150
8CWO|1|A|U|151
8CWO|1|A|A|152
8CWO|1|A|A|153
8CWO|1|A|C|154
*
8CWO|1|A|G|169
8CWO|1|A|C|170
8CWO|1|A|U|171
8CWO|1|A|A|172
8CWO|1|A|A|173
8CWO|1|A|U|174
8CWO|1|A|A|175
8CWO|1|A|C|176

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain T

30S ribosomal protein S20