IL_8CWO_023
3D structure
- PDB id
- 8CWO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cutibacterium acnes 30S ribosomal subunit with Sarecycline bound, body domain only in the local refined map
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.84 Å
Loop
- Sequence
- G(PSU)GCCAG*CGGUGAUAC
- Length
- 16 nucleotides
- Bulged bases
- 8CWO|1|A|G|514, 8CWO|1|A|U|516
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8CWO_023 not in the Motif Atlas
- Homologous match to IL_4LFB_021
- Geometric discrepancy: 0.1042
- The information below is about IL_4LFB_021
- Detailed Annotation
- Kink-turn related
- Broad Annotation
- No text annotation
- Motif group
- IL_52042.3
- Basepair signature
- cWW-cSW-tWH-L-R-L-R-tHS-cWW
- Number of instances in this motif group
- 6
Unit IDs
8CWO|1|A|G|497
8CWO|1|A|PSU|498
8CWO|1|A|G|499
8CWO|1|A|C|500
8CWO|1|A|C|501
8CWO|1|A|A|502
8CWO|1|A|G|503
*
8CWO|1|A|C|510
8CWO|1|A|G|511
8CWO|1|A|G|512
8CWO|1|A|U|513
8CWO|1|A|G|514
8CWO|1|A|A|515
8CWO|1|A|U|516
8CWO|1|A|A|517
8CWO|1|A|C|518
Current chains
- Chain A
- 16S ribosomal RNA
Nearby chains
- Chain D
- 30S ribosomal protein S4
- Chain L
- 30S ribosomal protein S12
- Chain Y
- mRNA
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