IL_8CWO_049

3D structure

PDB id

8CWO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cutibacterium acnes 30S ribosomal subunit with Sarecycline bound, body domain only in the local refined map

Experimental method

ELECTRON MICROSCOPY

Resolution

2.84 Å

Loop

Sequence

G(4OC)C(5MC)*G(UR3)AAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: 4OC, 5MC, UR3

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8CWO_049 not in the Motif Atlas

Homologous match to IL_5J7L_059

Geometric discrepancy: 0.0735

The information below is about IL_5J7L_059

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_65718.4

Basepair signature

cWW-cSH-cWS-cWW-cWW

Number of instances in this motif group

4

Unit IDs

8CWO|1|A|G|1388
8CWO|1|A|4OC|1389
8CWO|1|A|C|1390
8CWO|1|A|5MC|1391
*
8CWO|1|A|G|1484
8CWO|1|A|UR3|1485
8CWO|1|A|A|1486
8CWO|1|A|A|1487
8CWO|1|A|C|1488

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain X

30S ribosomal protein bS22

Chain Y

mRNA