IL_8D29_002

3D structure

PDB id

8D29 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of theophylline aptamer - apo form

Experimental method

X-RAY DIFFRACTION

Resolution

1.81 Å

Loop

Sequence

UAC*GCA

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8D29_002 not in the Motif Atlas

Geometric match to IL_4LFB_063

Geometric discrepancy: 0.1729

The information below is about IL_4LFB_063

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

213

Unit IDs

8D29|1|C|U|6
8D29|1|C|A|7
8D29|1|C|C|8
*
8D29|1|C|G|27
8D29|1|C|C|28
8D29|1|C|A|29

Current chains

Chain C

RNA (34-MER)

Nearby chains

Chain B

Fab light chain

Chain H

Fab heavy chain

Chain L

Fab light chain

Chain R

RNA (34-MER)