IL_8E30_033

3D structure

PDB id

8E30 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to compound streptogramin A analog 3142

Experimental method

ELECTRON MICROSCOPY

Resolution

1.91 Å

Loop

Sequence

CUAAG*CGAAG

Length

10 nucleotides

Bulged bases

8E30|1|I|A|1156

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8E30_033 not in the Motif Atlas

Homologous match to IL_4WF9_036

Geometric discrepancy: 0.0461

The information below is about IL_4WF9_036

Detailed Annotation

UAA/GAN

Broad Annotation

No text annotation

Motif group

IL_38507.2

Basepair signature

cWW-tWH-L-tHS-cWW

Number of instances in this motif group

16

Unit IDs

8E30|1|I|C|998
8E30|1|I|U|999
8E30|1|I|A|1000
8E30|1|I|A|1001
8E30|1|I|G|1002
*
8E30|1|I|C|1153
8E30|1|I|G|1154
8E30|1|I|A|1155
8E30|1|I|A|1156
8E30|1|I|G|1157

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain J

5S ribosomal RNA; 5S rRNA