IL_8E30_113

3D structure

PDB id

8E30 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to compound streptogramin A analog 3142

Experimental method

ELECTRON MICROSCOPY

Resolution

1.91 Å

Loop

Sequence

AAUUC*GUUAU

Length

10 nucleotides

Bulged bases

8E30|1|I|U|846, 8E30|1|I|U|931

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8E30_113 not in the Motif Atlas

Geometric match to IL_8B0X_179

Geometric discrepancy: 0.1167

The information below is about IL_8B0X_179

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_01742.1

Basepair signature

cWW-L-cWW-R-cWW

Number of instances in this motif group

3

Unit IDs

8E30|1|I|A|844
8E30|1|I|A|845
8E30|1|I|U|846
8E30|1|I|U|847
8E30|1|I|C|848
*
8E30|1|I|G|930
8E30|1|I|U|931
8E30|1|I|U|932
8E30|1|I|A|933
8E30|1|I|U|934

Current chains

Chain I

23S ribosomal RNA

Nearby chains