IL_8E32_072
3D structure
- PDB id
- 8E32 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli 50S ribosome bound to compound streptogramin analogs SA1 and SB1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.35 Å
Loop
- Sequence
- UGCAAAC*GGACGUAUA
- Length
- 16 nucleotides
- Bulged bases
- 8E32|1|I|A|1801, 8E32|1|I|C|1816, 8E32|1|I|U|1820
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8E32_072 not in the Motif Atlas
- Homologous match to IL_5J7L_313
- Geometric discrepancy: 0.0824
- The information below is about IL_5J7L_313
- Detailed Annotation
- Kink-turn related
- Broad Annotation
- No text annotation
- Motif group
- IL_17069.5
- Basepair signature
- cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW
- Number of instances in this motif group
- 5
Unit IDs
8E32|1|I|U|1798
8E32|1|I|G|1799
8E32|1|I|C|1800
8E32|1|I|A|1801
8E32|1|I|A|1802
8E32|1|I|A|1803
8E32|1|I|C|1804
*
8E32|1|I|G|1813
8E32|1|I|G|1814
8E32|1|I|A|1815
8E32|1|I|C|1816
8E32|1|I|G|1817
8E32|1|I|U|1818
8E32|1|I|A|1819
8E32|1|I|U|1820
8E32|1|I|A|1821
Current chains
- Chain I
- 23S ribosomal RNA
Nearby chains
- Chain K
- 50S ribosomal protein L2
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