IL_8E33_062

3D structure

PDB id

8E33 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to compound streptogramin analog SAB001

Experimental method

ELECTRON MICROSCOPY

Resolution

2.23 Å

Loop

Sequence

GCAC*GUGC

Length

8 nucleotides

Bulged bases

None detected

QA status

Self-complementary: GCAC,GUGC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8E33_062 not in the Motif Atlas

Geometric match to IL_5EW4_002

Geometric discrepancy: 0.2619

The information below is about IL_5EW4_002

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_71194.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

29

Unit IDs

8E33|1|I|G|1530
8E33|1|I|C|1531
8E33|1|I|A|1532
8E33|1|I|C|1533
*
8E33|1|I|G|1538
8E33|1|I|U|1539
8E33|1|I|G|1540
8E33|1|I|C|1541

Current chains

Chain I

23S ribosomal RNA

Nearby chains