IL_8E33_072

3D structure

PDB id

8E33 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to compound streptogramin analog SAB001

Experimental method

ELECTRON MICROSCOPY

Resolution

2.23 Å

Loop

Sequence

UGCAAAC*GGACGUAUA

Length

16 nucleotides

Bulged bases

8E33|1|I|A|1801, 8E33|1|I|C|1816, 8E33|1|I|U|1820

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8E33_072 not in the Motif Atlas

Homologous match to IL_5J7L_313

Geometric discrepancy: 0.0432

The information below is about IL_5J7L_313

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.5

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

8E33|1|I|U|1798
8E33|1|I|G|1799
8E33|1|I|C|1800
8E33|1|I|A|1801
8E33|1|I|A|1802
8E33|1|I|A|1803
8E33|1|I|C|1804
*
8E33|1|I|G|1813
8E33|1|I|G|1814
8E33|1|I|A|1815
8E33|1|I|C|1816
8E33|1|I|G|1817
8E33|1|I|U|1818
8E33|1|I|A|1819
8E33|1|I|U|1820
8E33|1|I|A|1821

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain K

50S ribosomal protein L2