IL_8E33_117

3D structure

PDB id

8E33 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to compound streptogramin analog SAB001

Experimental method

ELECTRON MICROSCOPY

Resolution

2.23 Å

Loop

Sequence

AAUUC*GUUAU

Length

10 nucleotides

Bulged bases

8E33|1|I|U|846, 8E33|1|I|U|931

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8E33_117 not in the Motif Atlas

Geometric match to IL_8B0X_179

Geometric discrepancy: 0.1251

The information below is about IL_8B0X_179

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_01742.1

Basepair signature

cWW-L-cWW-R-cWW

Number of instances in this motif group

3

Unit IDs

8E33|1|I|A|844
8E33|1|I|A|845
8E33|1|I|U|846
8E33|1|I|U|847
8E33|1|I|C|848
*
8E33|1|I|G|930
8E33|1|I|U|931
8E33|1|I|U|932
8E33|1|I|A|933
8E33|1|I|U|934

Current chains

Chain I

23S ribosomal RNA

Nearby chains