IL_8E36_037

3D structure

PDB id

8E36 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to compound streptogramin A analog 3146

Experimental method

ELECTRON MICROSCOPY

Resolution

2.38 Å

Loop

Sequence

UUAAGUG*CUAAA

Length

12 nucleotides

Bulged bases

8E36|1|I|A|1143

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8E36_037 not in the Motif Atlas

Geometric match to IL_5J7L_280

Geometric discrepancy: 0.06

The information below is about IL_5J7L_280

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_57188.5

Basepair signature

cWW-tWW-L-tWW-cWW-cSH

Number of instances in this motif group

5

Unit IDs

8E36|1|I|U|1018
8E36|1|I|U|1019
8E36|1|I|A|1020
8E36|1|I|A|1021
8E36|1|I|G|1022
8E36|1|I|U|1023
8E36|1|I|G|1024
*
8E36|1|I|C|1140
8E36|1|I|U|1141
8E36|1|I|A|1142
8E36|1|I|A|1143
8E36|1|I|A|1144

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain O

50S ribosomal protein L13