IL_8E41_111

3D structure

PDB id

8E41 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to tiamulin and VS1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.13 Å

Loop

Sequence

AAUUC*GUUAU

Length

10 nucleotides

Bulged bases

8E41|1|I|U|846, 8E41|1|I|U|931

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8E41_111 not in the Motif Atlas

Geometric match to IL_8B0X_179

Geometric discrepancy: 0.1342

The information below is about IL_8B0X_179

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_01742.1

Basepair signature

cWW-L-cWW-R-cWW

Number of instances in this motif group

3

Unit IDs

8E41|1|I|A|844
8E41|1|I|A|845
8E41|1|I|U|846
8E41|1|I|U|847
8E41|1|I|C|848
*
8E41|1|I|G|930
8E41|1|I|U|931
8E41|1|I|U|932
8E41|1|I|A|933
8E41|1|I|U|934

Current chains

Chain I

50S ribosomal RNA

Nearby chains