IL_8E46_121

3D structure

PDB id

8E46 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to antibiotic analog SLC21

Experimental method

ELECTRON MICROSCOPY

Resolution

2.32 Å

Loop

Sequence

GGC*GUCC

Length

7 nucleotides

Bulged bases

8E46|1|I|U|1460

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8E46_121 not in the Motif Atlas

Geometric match to IL_4YHW_002

Geometric discrepancy: 0.2336

The information below is about IL_4YHW_002

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

8E46|1|I|G|1449
8E46|1|I|G|1450
8E46|1|I|C|1451
*
8E46|1|I|G|1459
8E46|1|I|U|1460
8E46|1|I|C|1461
8E46|1|I|C|1462

Current chains

Chain I

23S ribosomal RNA

Nearby chains