IL_8E5T_028
3D structure
- PDB id
- 8E5T (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast co-transcriptional Noc1-Noc2 RNP assembly checkpoint intermediate
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4 Å
Loop
- Sequence
- UG*UGAA
- Length
- 6 nucleotides
- Bulged bases
- 8E5T|1|3|G|52, 8E5T|1|3|A|53
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8E5T_028 not in the Motif Atlas
- Geometric match to IL_4WF9_071
- Geometric discrepancy: 0.3967
- The information below is about IL_4WF9_071
- Detailed Annotation
- Major groove intercalation
- Broad Annotation
- Major groove intercalation
- Motif group
- IL_71421.2
- Basepair signature
- cWW-cWW
- Number of instances in this motif group
- 35
Unit IDs
8E5T|1|3|U|26
8E5T|1|3|G|27
*
8E5T|1|3|U|51
8E5T|1|3|G|52
8E5T|1|3|A|53
8E5T|1|3|A|54
Current chains
- Chain 3
- ITS2 ribosomal RNA
Nearby chains
- Chain G
- 60S ribosomal protein L8-A
- Chain K
- Proteasome-interacting protein CIC1
- Chain o
- Ribosome biogenesis protein 15
- Chain p
- ATP-dependent RNA helicase HAS1
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