IL_8EIU_128

3D structure

PDB id

8EIU (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome with A-loop mutations U2554C and U2555C

Experimental method

ELECTRON MICROSCOPY

Resolution

2.24 Å

Loop

Sequence

UGAGGU*AUGGAG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8EIU_128 not in the Motif Atlas

Geometric match to IL_7A0S_018

Geometric discrepancy: 0.2822

The information below is about IL_7A0S_018

Detailed Annotation

Triple sheared with non-canonical cWW

Broad Annotation

Triple sheared

Motif group

IL_29495.1

Basepair signature

cWW-tSH-tSH-tHS-tHS-cWW

Number of instances in this motif group

6

Unit IDs

8EIU|1|a|U|1720
8EIU|1|a|G|1721
8EIU|1|a|A|1722
8EIU|1|a|G|1723
8EIU|1|a|G|1724
8EIU|1|a|U|1725
*
8EIU|1|a|A|1735
8EIU|1|a|U|1736
8EIU|1|a|G|1737
8EIU|1|a|G|1738
8EIU|1|a|A|1739
8EIU|1|a|G|1740

Current chains

Chain a

23S rRNA

Nearby chains