IL_8EKB_218

3D structure

PDB id

8EKB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA, deacylated P-site tRNAmet, and thermorubin at 2.70A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

GCAAUG*CAGC

Length

10 nucleotides

Bulged bases

8EKB|1|2A|G|1332

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8EKB_218 not in the Motif Atlas

Geometric match to IL_4V88_408

Geometric discrepancy: 0.3855

The information below is about IL_4V88_408

Detailed Annotation

C-loop with extra cWW pair

Broad Annotation

C-loop

Motif group

IL_11347.2

Basepair signature

cWW-cWW-L-cWW-L

Number of instances in this motif group

3

Unit IDs

8EKB|1|2A|G|1319
8EKB|1|2A|C|1320
8EKB|1|2A|A|1321
8EKB|1|2A|A|1322
8EKB|1|2A|U|1323
8EKB|1|2A|G|1324
*
8EKB|1|2A|C|1330
8EKB|1|2A|A|1331
8EKB|1|2A|G|1332
8EKB|1|2A|C|1333

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2W

50S ribosomal protein L22

Chain 2X

50S ribosomal protein L23